SIREN Labs' Joint Publications

Note: Authors of SIREN partner labs = italics

Rademacher, E.H., Lokerse, A.S., Schlereth, A., Llavata-Peris, C.I., Bayer, M., Kientz, M., Freire-Rios, A., Borst, J.W., Lukowitz, W., Jürgens, G., and Weijers, D. (2012). Different auxin response machineries control distinct cell fates in the early plant embryo. Dev. Cell. 22, 211-222.

Xiang, D., Yang, H., Venglat, P., Cao, Y., Wen, R., Ren, M., Stone, S., Wang, E., Xiao, W., Weijers, D., Berleth, T., Laux, T., Selvaraj, G. and Datla, R. (2011). POPCORN function sin the auxin pathway to regulate embryonic body plan and meristem organization in Arabidopsis. Plant Cell. Advance Online Publication, doi: 10.1105/tpc.111.091777. (without FP7-PEOPLE acknowledgment but contribution to SIREN results)

Prasad K, Grigg SP, Barkoulas M, Yadav RK, Sanchez-Perez GF, Pinon V, Blilou I, Hofhuis H, Dhonukshe P, Galinha C, Mähönen AP, Muller WH, Raman S, Verkleij AJ, Snel B, Reddy GV, Tsiantis M, Scheres B. (2011) Arabidopsis PLETHORA transcription factors control phyllotaxis. Curr Biol. 21:1123-1128.

Schlereth, A.S., Möller, B., Liu, W., Flipse, J., Kientz, M., Rademacher, E.H., Schmid, M., Jürgens, G. and Weijers, D. (2010). MONOPTEROS controls embryonic root formation by regulating a mobile trancription factor. Nature. 464, 913-916.

Grigg, S., Galinha, C., Kornet  N., Canales, C., Scheres, B. and Tsiantis, M. (2009). Repression of apical homeobox genes is required for Arabidopsis embryonic root development. Current Biology. 19, 1485-149.

De Smet I, Vassileva V, De Rybel B, Levesque MP, Grunewald W, Van Damme D, Van Noorden G, Naudts M, Van Isterdael G, De Clercq R, Wang JY, Meuli N, Vanneste S, Friml J, Hilson P, Jürgens G, Ingram GC, Inzé D, Benfey PN, Beeckman T. (2008) Receptor-like kinase ACR4 restricts formative cell divisions in the Arabidopsis root. Science. 2008 Oct 24;322(5901):594-7.

Tucker MR, Hinze A, Tucker EJ, Takada S, Jürgens G, Laux T. (2008) Vascular signalling mediated by ZWILLE potentiates WUSCHEL function during shoot meristem stem cell development in the Arabidopsis embryo. Development. 135, 2839-2843. (without FP7-PEOPLE acknowledgment but contribution to SIREN results)

Sarkar AK, Luijten M, Miyashima S, Lenhard M, Hashimoto T, Nakajima K, Scheres B, Heidstra R, Laux T. (2007) Conserved factors regulate signalling in Arabidopsis thaliana shoot and root stem cell organizers. Nature. 446, 811-814.


Individual Publications

Gwyneth Ingram's Lab

Javelle M, Vernoud V, Rogowsky PM, Ingram GC. (2011) Epidermis: The formation and functions of a fundamental plant tissue. New Phytol. 189(1):17-39.

Kessler S, Shimosato-Asano H,  Friderike Keinath N, Wuest S, Ingram G, Panstruga R, and Grossniklaus U. (2010) Conserved molecular components for pollen tube reception and fungal invasion. Science. 330:968-71.

Ingram GC (2010) Family life at close quarters: Communication and constraint in Angiosperm seed development. Protoplasma.  247:195-214.

Stahl Y, Wink R, Ingram GC and Simon, R (2009) A signalling module controlling the stem cell niche in Arabidopsis root meristems. Current Biology. 9;19(11):909-14.

Johnson KL, Faulkner C, Jeffree CE, Ingram GC. (2008) The Phytocalpain DEK1 is a novel Arabidopsis growth regulator whose activity is regulated by proteolytic processing events. Plant Cell. 20(10):2619-2630.

Yang S, Johnson N, Talideh E, Mitchell S, Jeffree C, Goodrich G and Ingram G. (2008) The endosperm-specific ZHOUPI gene of Arabidopsis thaliana regulates endosperm breakdown and embryonic epidermal development. Development. 135(21):3501-9.

Thomas Laux' Lab

Ueda M, Zhang Z, Laux T. (2011) Transcriptional activation of Arabidopsis axis patterning genes WOX8/9 links zygote polarity to embryo development. Developmental Cell 20, 264-270. (SIREN MENTIONED)

Zhang Z, Laux T. (2010) The asymmetric division of the Arabidopsis zygote: from cell polarity to an embryo axis. Sex. Plant Reprod. 24, 161-169. (SIREN MENTIONED)

Ben Scheres' Lab

Dhonukshe P, Huang F, Galvan-Ampudia CS, Mähönen AP, Kleine-Vehn J, Xu J, Quint A, Prasad K, Friml J, Scheres B and Offringa R. (2010). Plasma membrane-bound AGC3 kinases phosphorylate PIN auxin carriers at TPRXS(N/S) motifs to direct apical PIN recycling. Development. 137: 3245-3255.

Dolf Weijer's Lab

Saiga, S., Möller, B., Watanabe, A., Abe, M., Weijers, D., and Komeda, Y. (2012). Control of embryonic meristem initiation in Arabidopsis by PHD finger protein complexes. Development, 139, 1391-1398. (without FP7-PEOPLE acknowledgment but contribution to SIREN results)

Llavata-Peris, C.I., Lokerse, A.S., Möller, B., De Rybel, B., and Weijers, D. (2012). Imaging of phenotypes, gene expression and protein localization during embryonic root formation in Arabidopsis.  Meth. Mol. Biol., in press. 

De Rybel, B., van den Berg, W., Lokerse, A., Liao, C.Y., van Mourik, H., Möller, B., Llavata-Peris, C.I., and Weijers, D. (2011). A versatile set of ligation-independent cloning vectors for functional studies in plants. Plant Physiol. 156, 1292-1299.

Rademacher, E.H., Möller, B., Lokerse, A.S., Llavata-Peris, C.I., van den Berg, W., and Weijers, D. (2011). A cellular expression map of the Arabidopsis AUXIN RESPONSE FACTOR gene family. Plant J. 68, 597-606.

Llavata Peris, C.I., Rademacher, E.H. and Weijers, D. (2010). Green beginnings - Pattern formation in the early plant embryo. Curr. Topics Dev. Biol. 91, 1-27.